POSTDOCTORALS | yugenomics

Akanksha Dubey, Ph.D

Education

2010 - 2014 Doctorate in Bioscience Engineering, CMPG, Department of Microbial and Molecular Systems, KU Leuven, Belgium.

2006 - 2008 Master of Science, M.Sc in Botany, Department of Botany, University of Delhi, India. Specialization in ‘Microbial Genetics’.

2003 -2006 Bachelor of Science (Honors), B.Sc.(Hons.) in Botany, Miranda House, University of Delhi, India.

Articles in peer-reviewed scientific journals

Steenackers, H.*; Dubey, A.*; Robijns, S.; Ermolat'ev, D.; Delattin, N.; Dovgan, B.; Girandon, L.; Fröhlich, M.; De Brucker, K.; Cammue, B.P.A.; Thevissen, K.; Balzarini, J.; Van der Eycken, E.V.; Vanderleyden, J. Evaluation of the Toxicity of 5-Aryl-2-Aminoimidazole-Based Biofilm Inhibitors against Eukaryotic Cell Lines, Bone Cells and the Nematode Caenorhabditis elegans. Molecules 2014, 19, 16707-16723.

* Equal contribution

Pulido-Tamayo, S., Sánchez-Rodríguez, A., Swings, T., Van den Bergh, B., Dubey, A., Steenackers, H., Michiels, J., Fostier, J., Marchal, K. Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations. Nucleic Acids Res, 2015.

Dubey A., Oreya S., Gupta N., Pandey KL., Shah P and Arif M In vitro regeneration of Jatropha curcas L. using petiole explants. Biochem. Cell. Arch.10(1) , 7-12, 2010.

IMa (Meeting abstracts, presented at international scientific conferences and symposia, published or not published in proceedings or journals)

Dubey, A., Sanchez, A, De Weerdt, A., Marchal, K., Steenackers, H., Vanderleyden, J., (2013) “Experimental Evolution: An approach to understand the mode of action of a biofilm inhibitor. Eurobiofilms, Ghent, Belgium ,2013.

Dubey, A., Sanchez, A, De Weerdt, A., Marchal, K., Steenackers, H., Vanderleyden, J., (2013) “ Experimental Evolution: An approach to understand the mode of action of a biofilm inhibitor.” Applied Bioinformatics and Public Health Microbiology conference, Moller Centre, Cambridge, 2013.

Dubey, A., Sanchez, A, De Weerdt, A., Marchal, K., Steenackers, H., Vanderleyden, J., (2012) “An artificial evolution approach to study the mode of action of a Salmonella biofilm inhibitor." 14th Gut day symposium, KU Leuven Belgium, 2012.

Dubey, A., Sanchez, A, De Weerdt, A., Marchal, K., Steenackers, H., Vanderleyden, J., (2012) “An artificial evolution approach to study the mode of action of a Salmonella biofilm inhibitor”, 6th ASM Conference on Biofilms, Miami, Florida USA (2012)

Robijns, S., Steenackers, H., Hermans, K., Dubey, A., Levin, J., Ermolatev, D., Voet, A., De Maeyer, M., Marchal, K., Marchand, A., Chaltin, P., Van der Eycken, E., De Vos, D., De Keersmaecker, S., Vanderleyden, J. (2012). Development of anti-biofilm agents and elucidation of their mode of action. Knowledge for Growth 2012. ICC, Ghent, 24 May 2012, Abstract No. Industrial Biotech - 7.

Dubey, A., De Weerdt, A., Vanderleyden, J., Marchal, K., Steenackers, H. (2011). An artificial evolution approach to study the mode of action of a Salmonella biofilm inhibitor. Workshop on Bacterial & Fungal Biofilms. Ghent, Belgium, 22 September 2011.

Gnanendra Shanmugam, Ph.D

Education

2009 - 2014
Doctor of Philosophy in Bioinformatics, Datmining and Text mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu, India.

2004 - 2005
Master of Philosophy in Biotechnology, Bharathidasan University, Tiruchirappalli, Tamilnadu, India.

2002-2004
Master of Science in Bioinformatics, Department of Bioinformatics, Vel’s College of Science, University of Madras, Chennai, Tamilnadu, India.

1999-2002
Bachelor of Science in Microbiology, Zoology, Chemistry, PVKN Govt Degree College, SV University, Chittoor, Andhra Pradesh, India.

Articles in peer-reviewed scientific journals

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2016) 2D and 3D-QSAR Study of Acyl Homoserine Lactone Derivatives as Potent Inhibitors of Quorum Sensor, Sdia in Salmonella typhimurium, Int. J. Bioautomation (In Press)

Shanmugam Anusuya, Antonydhason Vimala, Gnanendra Shanmugam, Venkattapan Anbazhagan, Devadasan Velmurugan and Michael Gromiha. (2015). Drug-Target Interaction Prediction Methods and Applications, Current Protein & Peptide Science, Special thematic issue on “Identifying drug–target interactions based on heterogeneous biological data” (in press).

S. Ranjitha, G. Rajarajan, T.S. Gnanendra, P.M. Anbarasan, V. Aroulmoji (2015) Structural and optical properties of purpurin for dye‐sensitized solar cells, Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy,149: 997‐ 1008

T. Dharmalingum, V. Udhaya, T. Umaarasu, V. Elangovan, S.V, Rajesh and S. Gnanendra (2015) Prediction of drug resistance using Genotypic and docking analysis among antiretroviral therapy naïve and first line treatment failures in Salem, Tamilnadu, India, Current HIV Research, 13(2), 160‐172

M. Govarthanan, S.H. Park, L. Praburaman, M. Cho, K.J. Lee, H. Myung, S. Gnanendra, S. Kamala‐

Kannan, B.T. Oh (2015) Relative expression of low molecular weight protein, tyrosine phosphatase (Wzb gene) of Herbaspirillum sp. GW103 towards arsenic stress and molecular modelling, Current microbiology, 71: 311‐316

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2013) Identification of potent inhibitors for Salmonella typhimurium quorum sensing via virtual screening and pharmacophore modelling, Combinatorial Chemistry & High Throughput Screening, 16 (10): 826 – 839

Gnanendra Shanmugam, Anusuya Shanmugam, Natarajan Jeyakumar (2012) Molecular modeling and active site analysis of SdiA homolog, a putative quorum sensor for Salmonella typhimurium pathogenecity reveals specific binding patterns of AHL transcriptional regulators, J Mol. Model., 18 (10): 4709 – 4719.

IMa (Meeting abstracts, presented at international scientific conferences and symposia, published or not published in proceedings or journals)

Gnanendra S and Rajesh SV (2013) “Understanding the role of receptors as potential drug targets” in a International Symposium On Bioscience Research for Present and Future (BIOMILLENNIUM’13) Department of Biosciences, Vivekananda College of Arts and Sciences for Women, Tiruchengode, TamilNadu, INDIA, on 11th November 2013.

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2013) “2D and 3D QSAR studies on the potent inhibitors of Salmonella typhimurium ” International Conference on Bimolecular Forms and Functions – A Celebration of 50 years of the Ramachandran Map, organized by Molecular Biophysics Unit, IISc, Bangalore, India, January, 8 – 11, 2013.

MICROBIAL GENOMICS LABORATORY

Department of Applied Microbiology and Biotechnology

280 Daehak-Ro, Gyeongsan, Gyeongbuk 712-749

Yeungnam University, South Korea

Akanksha Dubey, Ph.D

Akanksha Dubey, Ph.D

Education

2010 - 2014 Doctorate in Bioscience Engineering, CMPG, Department of Microbial and Molecular Systems, KU Leuven, Belgium.

IMa (Meeting abstracts, presented at international scientific conferences and symposia, published or not published in proceedings or journals)

Dubey, A., Sanchez, A, De Weerdt, A., Marchal, K., Steenackers, H., Vanderleyden, J., (2013) “Experimental Evolution: An approach to understand the mode of action of a biofilm inhibitor. Eurobiofilms, Ghent, Belgium ,2013.

Gnanendra Shanmugam, Ph.D

Education

2009 - 2014
Doctor of Philosophy in Bioinformatics, Datmining and Text mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu, India.

2004 - 2005
Master of Philosophy in Biotechnology, Bharathidasan University, Tiruchirappalli, Tamilnadu, India.

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2016) 2D and 3D-QSAR Study of Acyl Homoserine Lactone Derivatives as Potent Inhibitors of Quorum Sensor, Sdia in Salmonella typhimurium, Int. J. Bioautomation (In Press)

T. Dharmalingum, V. Udhaya, T. Umaarasu, V. Elangovan, S.V, Rajesh and S. Gnanendra (2015) Prediction of drug resistance using Genotypic and docking analysis among antiretroviral therapy naïve and first line treatment failures in Salem, Tamilnadu, India, Current HIV Research, 13(2), 160‐172

M. Govarthanan, S.H. Park, L. Praburaman, M. Cho, K.J. Lee, H. Myung, S. Gnanendra, S. Kamala‐

Kannan, B.T. Oh (2015) Relative expression of low molecular weight protein, tyrosine phosphatase (Wzb gene) of Herbaspirillum sp. GW103 towards arsenic stress and molecular modelling, Current microbiology, 71: 311‐316

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2013) Identification of potent inhibitors for Salmonella typhimurium quorum sensing via virtual screening and pharmacophore modelling, Combinatorial Chemistry & High Throughput Screening, 16 (10): 826 – 839

Akanksha Dubey, Ph.D

Akanksha Dubey, Ph.D

Education

2010 - 2014 Doctorate in Bioscience Engineering, CMPG, Department of Microbial and Molecular Systems, KU Leuven, Belgium.

IMa (Meeting abstracts, presented at international scientific conferences and symposia, published or not published in proceedings or journals)

Dubey, A., Sanchez, A, De Weerdt, A., Marchal, K., Steenackers, H., Vanderleyden, J., (2013) “Experimental Evolution: An approach to understand the mode of action of a biofilm inhibitor. Eurobiofilms, Ghent, Belgium ,2013.

Gnanendra Shanmugam, Ph.D

Education 2009 - 2014 Doctor of Philosophy in Bioinformatics, Datmining and Text mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu, India.

2004 - 2005 Master of Philosophy in Biotechnology, Bharathidasan University, Tiruchirappalli, Tamilnadu, India.

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2016) 2D and 3D-QSAR Study of Acyl Homoserine Lactone Derivatives as Potent Inhibitors of Quorum Sensor, Sdia in Salmonella typhimurium, Int. J. Bioautomation (In Press)

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T. Dharmalingum, V. Udhaya, T. Umaarasu, V. Elangovan, S.V, Rajesh and S. Gnanendra (2015) Prediction of drug resistance using Genotypic and docking analysis among antiretroviral therapy naïve and first line treatment failures in Salem, Tamilnadu, India, Current HIV Research, 13(2), 160‐172

M. Govarthanan, S.H. Park, L. Praburaman, M. Cho, K.J. Lee, H. Myung, S. Gnanendra, S. Kamala‐

Kannan, B.T. Oh (2015) Relative expression of low molecular weight protein, tyrosine phosphatase (Wzb gene) of Herbaspirillum sp. GW103 towards arsenic stress and molecular modelling, Current microbiology, 71: 311‐316

​

Gnanendra Shanmugam, Syed Mohamed, Jeyakumar Natarajan (2013) Identification of potent inhibitors for Salmonella typhimurium quorum sensing via virtual screening and pharmacophore modelling, Combinatorial Chemistry & High Throughput Screening, 16 (10): 826 – 839

Education

2009 - 2014
Doctor of Philosophy in Bioinformatics, Datmining and Text mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu, India.

2004 - 2005
Master of Philosophy in Biotechnology, Bharathidasan University, Tiruchirappalli, Tamilnadu, India.